TreeList Class
ABE\treelist_doc.js:4
The TreeList class (trees
variable) represents a list of trees that can be manipulated (e.g., harvested) with functions of the class.
When javascript code is executed in the context of an Activity, a variable 'trees' is available in the global context. This instance
of a TreeList is linked automatically to the forest stand that is currently managed. Note that a TreeList can created using new TreeList
- in this
case the TreeList is not linked automatically to a forest stand (but see also loadFromList()).
Overview
initializing the list
The main function for loading (i.e. making available for manipulation) trees of a forest stand is loadAll()
or load()
. loadAll()
can be used to load either
all trees, and load()
to load only a subset of trees (based on filter criteria).
manipulating the content of the list
The trees in a list (loaded by load()
) may be manipulated using functions such as filter()
or sort()
. There are functions helping to get aggregate values
(mean()
, sum()
), or to get the value of a given percentile()
.
manipulationg trees
Trees present in the tree list may be harvested or simply cut down. Main functions are kill()
, harvest()
. If simulate
is true, harvested/killed trees
are only marked for removal. At a later point in time, all marked trees can be removed using removeMarkedTrees()
.
general notes
The tree list heavily used the expression engine of iLand https://iland-model.org/Expression. Expressions are provided as strings to the
respective Javascript functions (e.g.,filter
) and evaluated by iLand. Note that tree species names are treated as a special case (https://iland-model.org/Expression#Constants).
Examples
// 'trees' variable is always available.
// this loads *all* trees of the current forest stand (i.e. trees>4m)
trees.loadAll();
trees.simulate = true; // enable simulation mode (this is the default)
// keep only spruce trees with a dbh>20cm in the list:
trees.filter("species = piab and dbh>20"); // note: piab is a constant and not a string
// now harvest all trees (since simulate=true, the trees are only marked for harvesting)
trees.harvest();
...
// later: remove all trees from the system that are marked for removal (harvest/kill)
trees.removeMarkedTrees();
Item Index
Methods
Methods
clear
()
Clear the list without affecting the trees in the list. Note that explcitly clearing the list is usually not necessary (e.g. when using load() )
Example:
trees.clear(); // empty lsit
trees.log(trees.count); // -> 0
filter
-
filter
Apply a filter on the list. Only trees for which the filter condition filter
is true, remain in the list.
See also: simulate
Parameters:
-
filter
StringA valid filter Expression.
Returns:
the number of trees that remain in the list.
Example:
trees.loadAll();
trees.filter('dbh>10'); // only trees with dbh>10 remain in the list
trees.filter('incsum(volume)<100'); // keep trees with a total of 100m3 in the list
filterRandom
-
n_trees
filterRandom()
selects randomly n_trees
from the list and removes all other trees.
See also: filterRandomExclude
Parameters:
-
n_trees
Intthe number of trees to select randomly from the list
Returns:
the number of trees that were selected.
Example:
stand.trees.loadAll(); // load all trees
// filter so, that only 100 trees remain in the list:
stand.trees.filterRandom(100);
// do something, e.g.,
stand.trees.harvest(); // remove those 100 trees
filterRandomExclude
-
n_trees
filterRandomExclude()
excludes randomly n_trees
trees from the list, i.e. the number of trees after execution in the list is
n_trees_before - n_trees
(the number of trees before the call minus the trees excluded). This is useful when you want to
keep a number of trees remaining on the stand (i.e., not harvested). Note that the exclusion is relative to the current content of the list (e.g., filtered).
A typical use is to reduce the number of trees on a stand to a given number of stems (e.g., from a yield table).
See also: filterRandom
Parameters:
-
n_trees
Intthe number of trees to select randomly from the list
Returns:
the number of trees that were selected.
Example:
stand.trees.loadAll(); // load all trees, e.g. 1500 trees
let yield_table_target = 1200;
stand.trees.filterRandomExclude(yield_table_target); // 300 trees remain in the lsit
// do something, e.g.,
stand.trees.harvest(); // remove trees in the list (n=300), i.e. 1200 will remain on the stand
// using a subset of trees:
stand.trees.load('species = fasy'); // load all beech trees
stand.trees.filterRandomExclude(50); // 50 beech trees should not remain in the list (i.e. excluded from harvest)
stand.trees.harvest(); // remove all but 50 beech trees from the stand
harvest
-
filter
-
fraction
Remove the fraction
of all trees [0..1] for which filter
evalulates to true
. Return number of removed trees.
When trees are harvested, the biomass is removed from the system (compare kill/cut).
When harvest()
is called without parameters, then all trees that are currently in the list are removed (see also load()
).
Parameters:
-
filter
StringA valid filter Expression.
-
fraction
DoubleThe fraction [0..1] of trees that should be harvested. Default value is 1.
Returns:
the number of trees that have been removed.
Example:
trees.loadAll();
trees.harvest('species=piab', 0.2); // remove 20% (selected randomly) from all spruce
trees.harvest('dbh>30'); // harvest all trees with dbh>30cm
kill
-
filter
Kill (i.e., cut down and do not remove from the forest) the trees in the list, filtered with filter
.
See also: simulate
Parameters:
-
filter
StringA valid filter Expression.
Returns:
the number of trees that have been removed.
Example:
trees.loadAll();
trees.kill('dbh<10'); // kill all trees with a dbh<10cm
killSaplings
-
filter
killSaplings()
provides an access to the cohorts of the sapling layer in iLand https://iland-model.org/sapling+growth+and+competition .
https://iland-model.org/sapling+variables provides a list of available variables.
The function removes all sapling cohorts for which expr
returns true
.
Note: The interface to saplings currrently much simpler compared to the interface for trees >4m.
Parameters:
-
filter
Stringa filter expression to select the saplings that should be removed
Returns:
the number of sapling cohorts that have been removed.
Example:
trees.killSaplings('species=piab and age<5'); // kill spruce saplings younger than 5yrs
load
-
filter
The load()
method is the main means to get all the trees of a forest stand into the list.
Per default, all trees (i.e. trees>4m height) that are located on the forest stand are loaded. If filter
is provided, only a subset
of the trees are loaded. filter
can either be a probability (between 0..1) for selecting individual trees, or an Expression using tree
variables.
trees.load(0.2); // load (randomly selected) 20% of all trees
trees.load("rnd(0,1)<0.2)"); // the same as above, but using an Expression
// load a subset of trees (for which the given Expression evalulates to true):
trees.load("species=piab and dbh>20");
Parameters:
-
filter
Stringoptional filter criterion (see above).
Returns:
the number of trees loaded.
loadAll
()
Integer
Load all trees (living trees, >4m height) of the current stand
into the internal list.
Returns:
the number of loaded harvested.
loadFromList
-
other_list
-
filter
The loadFromList()
method is a way to copy tree list data from a different TreeList object. A typical use case is when you
need to process parts of a tree lists (e.g., based on location).
Per default, all trees (i.e. trees>4m height) that are located in other_list
are loaded. If filter
is provided, only a subset
of the trees are loaded. filter
can either be a probability (between 0..1) for selecting individual trees, or an Expression using tree
variables. Note also, that the linked forest stand is copied as well, i.e. a later call to loadAll()
would load all trees of that stand.
var my_list = new TreeList;
stand.trees.load('dbh > 20');
// loop over three species and count for each species the number of trees >20cm
// (note that this would have been also possible with the sum() function)
for (s of ['piab', 'fasy', 'lade']) {
const n = my_list.loadFromList(stand.trees, 'species=' + s);
console.log(Species '${s}' has ${n} trees >20cm.
);
}
Parameters:
-
other_list
TreeListTreeList object to copy tree information from
-
filter
Stringoptional filter criterion (see above).
Returns:
the number of trees loaded.
mean
-
expr
-
filter
Calculates the mean value of a given expr
that can contain any of the available tree variables. The optional filter
is another expression
that filters the trees that are processed.
Return the mean value.
See also: sum
Parameters:
-
expr
Stringa valid expression that should be processed
-
filter
Stringonly trees that pass the filter are processed
Returns:
the mean value of the population
Example:
trees.loadAll();
console.log('mean dbh: ' + trees.mean('dbh') );
var tdbh = trees.mean('height', 'dbh>=30'); // mean height of all trees >30cm
var ldbh = trees.mean('height', 'dbh<30'); // mean height of all belwo 30cm - note that the list is not altered
percentile
-
perc
Return the perc
th percentile (0..100) value from the list of trees. The function requires that a sort operation
has been executed before this function is called. The sort()
function assigns to each tree in the list a value (e.g., the dbh
). The percentile
function
accesses those value. Without a call to sort
the function returns 0 for all values. The percentile 100 returns the maximum value within the list (i.e., the value last
attached to the last tree in the list).
See also:sort
Parameters:
-
perc
Inta number between 0 and 100 that should be returned.
Returns:
the value at the given percentile (see details)
Example:
trees.loadAll();
trees.sort('dbh'); // smallest trees in front of the list
console.log("IQR: " + trees.percentile(75) - trees.percentile(25) );
console.log("min: " + trees.percentile(0) + ", median: " + trees.percentile(50) + ", max: " + trees.percentile(100) );
randomize
()
Randomly shuffles the list of trees. Trees in a newly refreshed list (e.g., loadAll()
) have a non-random spatial pattern. When
randomness is wanted (e.g., to select randomly N trees), then randomize
should be used.
Note: randomize
overwrites the values of a sort call.
See also: loadAll
Example:
trees.loadAll();
trees.sort('dbh');
trees.filter('dbh<' + trees.percentile(50) ); // only the population with dbh < median(dbh) remains
// to randomly select from this population:
trees.randomize();
trees.filter('incsum(1) < 100'); // select 100 trees from the population
removeMarkedTrees
()
Integer
Check all trees of the stand and either kill or harvest those trees that are marked for that operation.
Returns:
the number of trees that have been removed.
sort
-
sort_expr
sort()
sorts the tree list according to the numeric value of the expression sort_expr
. The sort order is ascending, i.e., after sorting the tree with the smallest
value is at the beginning of the list. Descending order can be achieved by inverting the sign of the expression. A sorted list is useful
for extracting percentile values or for using the incsum
function of expressions [iland-model.org/Expression].
See also: percentile
Parameters:
-
sort_expr
Stringa valid expression used for sorting
Example:
trees.loadAll();
trees.sort('volume'); // small trees in front of the list
trees.filter('incsum(volume) < 100'); // keep 100m3 of the trees with the lowest volume
trees.loadAll();
trees.sort('-x'); // x-coordinate, descending, trees start from the 'right'
trees.filter('incsum(1)<=100'); // filter 100 trees on the right edge of the area
spatialFilter
-
grid
-
filter
spatialFilter()
filters the tree that are currently in the list based on their spatial location and the content
of the grid
. The function checks for every tree the corresponding pixel of grid
and evaluates the filter
function. If the
function returns true, the tree is kept (if the tree is outside of the grid
the tree is removed).
Note that when not otherwise altered, the default name of a grid is simply 'x', so filtering for a certain value could be achieved
by using 'x=1' as a filter
.
Parameters:
Returns:
the number of trees still remaining in the list, or -1 if an error occurs.
Example:
// create a grid
var g = new Grid();
g.create(10,10,5); // 50x50m, default name is 'x'
g.setOrigin(30,20); // set lower left corner to 30/20
// in the context of ABE:
trees.loadAll(); // load all trees
// filter so, that only trees that are located on a pixel in g with the value 1 remain:
trees.spatialFilter(g, 'x=1');
// do something, e.g.,
trees.harvest();
sum
-
expr
-
filter
Calculates the sum of a given expr
that can contain any of the available tree variables. The optional filter
is another expression
that filters the trees that are processed. Returns the sum of expr
.
Note: counting trees that fulfill the filter
expression can be expressed as: sum('1', '<filter-expr>')
.
See also:mean
Parameters:
-
expr
Stringa valid expression that should be processed
-
filter
Stringonly trees that pass the filter are processed
Returns:
the sum over the value of expr
of the population
Example:
trees.loadAll();
console.log('total basal area: ' + trees.sum('basalarea') );
console.log('N trees >30cm: ' + trees.sum('1', 'dbh>30') ); // note that '1' is a string (and parsed by the expression engine)
tree
()
Tree
tree(index)
returns the tree with index index
(index is 0-based) from the current list. The returned Javascript object
is a reference to the represented tree in iLand. See Tree for more details.
See also: treeObject
Returns:
a reference to the tree with index index
(see above). If the index is out of range, the valid
property of the returned object is false
.
Example:
trees.loadAll(); // fill the tree list
// loop over all trees
for (var i=0;i<trees.count;++i)
console.log( trees.tree(i).dbh );
treeObject
()
Tree
treeObject(index)
returns the tree with index index
(index is 0-based) from the current list. A new Javascript object
is created for the tree. See Tree for more details.
See also: tree
Returns:
a object representing the tree with index index
(see above), or an invalid Tree object (if index is out of range).
Example:
trees.loadAll(); // fill the tree list
var x = trees.treeObject(7); // 8th tree in the list
// access the tree
if (x.valid == true)
console.log(x.dbh);
Properties
count
Integer
the number of trees that are currently loaded in the list.
simulate
Boolean
When simulate
is true, harvest operations are not actually executed, but affected trees are marked as either for harvest or killing. Calling removeMarkedTrees()
then
executes the harvest operation.
Note: tree variables markharvest
, markcut
, markcrop
are available for use in filter()
or for visualization in iLand.
Default: true
standId
Integer
the ID of the currently active stand (or -1).