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1222 2958d 09h werner / public SVN  
1221 2958d 09h werner /branches/ public SVN  
1220 2958d 09h werner /branches/version1.0/ Version 1.0  
1218 2958d 11h werner / clean up repository - make 1.0 trunk again!  
1217 2958d 11h werner / clean up repository - make 1.0 trunk again!  
1202 3009d 10h werner /branches/iland_regen/src/ searching/fixing issues with carbon cycle: NEP as provided by carbonflow output (NPP-Rh-Mgmt) is different from NEP as derived by the delta of the carbon stocks.
As usual, very hard to track down these issues, but:
* bark beetle module: foliage loss from BB-trees now correctly routed to soil
* order of modules in model: switched disturbances and carbon cylcle (in order to correctly track all carbon changes due to disturbances)
* fixed a problem with the calculation of NPP: after disturbances stand level NPP was set to 0 (since statistics were recalculated after disturbaces, but NPP values are not available then). Introduced: StandStatistics::clearOnlyTrees()
* flow from branches to the atmosphere (decay of branches) now tracked correctly (changes the NEP calulation).
 
1182 3104d 09h werner /branches/iland_regen/src/ Torus also effective for seed distribution
new output "SaplingDetails" (super high detail level of individual cohorts)
version information also in ilandc [move version.cpp to core]

[due to a sync problem with the SVN server, some revisions where lost: here they are:]
compiling ilandc

some code clean up - removed old code (sapling.cpp) for sapling trees and establishment.
 
1163 3174d 15h werner /branches/iland_regen/src/ removed the "sapling.h" everywhere.
open:
* establishment: use better random order of species (e.g. by providing N random lists in speciesSet)
 
1158 3176d 11h werner /branches/iland_regen/src/ further performance improvements in regeneration/sapling module.
In total (sim 80 yrs WBT 2km2, from bare ground), iLand is +- 35% faster:
* seed dispersal (not today)
* optimized use of LRI-correction
* better linearization in sapling growth (height growth potential)
 
1157 3176d 18h werner /branches/iland_regen/ merge of changes in the trunk (up to the version used for the 2016 DICE simulation batch).  
1104 3246d 16h werner /branches/iland_regen/ Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone
 
863 4023d 10h werner /branches/port_qt5_64bit/ renaming of the FOME to AMIE.
unfortunately, some partial merge of changes in Qt4-branch.
 
855 4051d 10h werner /branches/port_qt5_64bit/src/ fixed bug in landscape output
added (not already included) mode for dynamicstand output to aggregate to ru level (without species level)
now newly recruited trees are also included in the stand statistics (ru-level).
 
837 4058d 13h werner /branches/port_qt5_64bit/src/ * added total carbon to stand output
* created a new output "landscape" for stand aggregates on landscape level (per species)
* improved error handling ModelController
* improved ilandc: now model settings can be changed via command line (and javascript function can be called)
* finalized "background external seeds"
 
824 4063d 16h werner /branches/port_qt5_64bit/src/ fixed *big* regeneration bug. The map with the height of saplings on a resource unit was used in the establishment subroutine although it was *invalid*. Now the establishment and the regeneration are (again?) in one function and use the same valid map.
this removed the strange stripes in the regeneration pattern (there should have been crashes, but weren't). Consequently, the performance debug output was modified.
added better formatting to debugtimer.cpp for large times (in hours, minutes, seconds).
 
779 4230d 11h werner /branches/port_qt5_64bit/  
671 4813d 12h werner /trunk/src/ Necessary changes for GPL licence (i.e. headers in all source files)  
639 4974d 09h werner / move current content to the "trunk"  
615 5033d 13h werner /src/ removed windows specific _isnan() calls  
587 5072d 05h werner /src/ added carbon output.
lots of changes necessary to get this done (especially budgeting of biomass pools)
 

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