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1222 3151d 09h werner / public SVN  
1221 3151d 09h werner /branches/ public SVN  
1220 3151d 09h werner /branches/version1.0/ Version 1.0  
1218 3151d 11h werner / clean up repository - make 1.0 trunk again!  
1217 3151d 11h werner / clean up repository - make 1.0 trunk again!  
1202 3202d 09h werner /branches/iland_regen/src/ searching/fixing issues with carbon cycle: NEP as provided by carbonflow output (NPP-Rh-Mgmt) is different from NEP as derived by the delta of the carbon stocks.
As usual, very hard to track down these issues, but:
* bark beetle module: foliage loss from BB-trees now correctly routed to soil
* order of modules in model: switched disturbances and carbon cylcle (in order to correctly track all carbon changes due to disturbances)
* fixed a problem with the calculation of NPP: after disturbances stand level NPP was set to 0 (since statistics were recalculated after disturbaces, but NPP values are not available then). Introduced: StandStatistics::clearOnlyTrees()
* flow from branches to the atmosphere (decay of branches) now tracked correctly (changes the NEP calulation).
 
1177 3328d 09h werner /branches/iland_regen/src/ updating the sapling growth (calculation of stem numbers)  
1163 3367d 15h werner /branches/iland_regen/src/ removed the "sapling.h" everywhere.
open:
* establishment: use better random order of species (e.g. by providing N random lists in speciesSet)
 
1158 3369d 11h werner /branches/iland_regen/src/ further performance improvements in regeneration/sapling module.
In total (sim 80 yrs WBT 2km2, from bare ground), iLand is +- 35% faster:
* seed dispersal (not today)
* optimized use of LRI-correction
* better linearization in sapling growth (height growth potential)
 
1157 3369d 18h werner /branches/iland_regen/ merge of changes in the trunk (up to the version used for the 2016 DICE simulation batch).  
1104 3439d 15h werner /branches/iland_regen/ Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone
 
1102 3440d 04h werner /branches/port_qt5_64bit/src/ fixed couple of clang warnings.

some debugging/profiling work w.r.t. establishment/regen.
 
936 3957d 10h werner /branches/port_qt5_64bit/src/ searching for bugs in the bookkeeping of increments, volumes.
very cumbersome....
 
863 4216d 10h werner /branches/port_qt5_64bit/ renaming of the FOME to AMIE.
unfortunately, some partial merge of changes in Qt4-branch.
 
855 4244d 10h werner /branches/port_qt5_64bit/src/ fixed bug in landscape output
added (not already included) mode for dynamicstand output to aggregate to ru level (without species level)
now newly recruited trees are also included in the stand statistics (ru-level).
 
837 4251d 13h werner /branches/port_qt5_64bit/src/ * added total carbon to stand output
* created a new output "landscape" for stand aggregates on landscape level (per species)
* improved error handling ModelController
* improved ilandc: now model settings can be changed via command line (and javascript function can be called)
* finalized "background external seeds"
 
824 4256d 15h werner /branches/port_qt5_64bit/src/ fixed *big* regeneration bug. The map with the height of saplings on a resource unit was used in the establishment subroutine although it was *invalid*. Now the establishment and the regeneration are (again?) in one function and use the same valid map.
this removed the strange stripes in the regeneration pattern (there should have been crashes, but weren't). Consequently, the performance debug output was modified.
added better formatting to debugtimer.cpp for large times (in hours, minutes, seconds).
 
779 4423d 11h werner /branches/port_qt5_64bit/  
697 4963d 08h werner /trunk/ Doxygen documentation revisited.
After re-establishing doxygen documentation (last update: 2009) a lot of smaller/medium documentation fixes.
Documentation is something that could definitely be always improved ;)
 
671 5006d 12h werner /trunk/src/ Necessary changes for GPL licence (i.e. headers in all source files)  
639 5167d 09h werner / move current content to the "trunk"  
615 5226d 12h werner /src/ removed windows specific _isnan() calls  
588 5264d 16h werner /src/core/ added carbon-bookkeeping in the regeneration layer.  
587 5265d 05h werner /src/ added carbon output.
lots of changes necessary to get this done (especially budgeting of biomass pools)
 
575 5267d 14h werner /src/ * renamed toString() from IException to message() (several occurences).
* added a "name" property to the MapGridWrapper
 
504 5357d 08h werner /src/ New output for "saplings"  
483 5377d 14h werner /src/core/ recruitment: recruit the number of individuals provided by the Reineke equation.
(correct spelling error: reinecke -> reineke)
 
466 5383d 18h werner /src/ added fields to establishment debug output.  
454 5433d 15h werner /src/ improvements of regeneration/establishment. Looking for bug that stems obviously from copy-constructor problems (resourceUnitSpecies).  
453 5434d 04h werner /src/ sapling growth now in a basic working state. started to implement recruitment. One bug with the "maximum-establishment-height-grid" known.
added also visualization of regeneration layer. Once I have time, I should restructure the drawing/visualization code as it gets quirky (and a paper-concept is available...)
 
277 5737d 03h werner /src/ added "Gesamtwuchsleistung" i.e. total growth.  
261 5741d 08h werner /src/ * added NPP aboveground to stats
* some update in comments
 
257 5742d 05h werner /src/ added production based (tree) statistics.
StandOut after tree initialization.
some documentation polishing.
 
248 5746d 00h werner /src/ doxygen doc.  
240 5747d 04h werner /src/ water cycle yields first results.
implemented a "createStandStatistics()" function, that calculates stocked areas, and statistics after initialization and before the actual model run.
 
234 5747d 23h werner /src/core/ added (during dev. of watercycle) new properties: area() to ResourceUnit, leafArea() to Tree, added LAI-counting to StandStatistics.  
180 5763d 23h werner /src/ created StandStatistics (similar to the solution in Picus). Each tree adds itself to the statistics object of RU x species. During yearEnd() of RessourceUnit the data is aggregated for the whole stand.