| Rev |
Age |
Author |
Path |
Log message |
Diff |
| 1222 |
3037d 16h |
werner |
/ |
public SVN |
|
| 1221 |
3037d 16h |
werner |
/branches/ |
public SVN |
|
| 1220 |
3037d 17h |
werner |
/branches/version1.0/ |
Version 1.0 |
|
| 1218 |
3037d 19h |
werner |
/ |
clean up repository - make 1.0 trunk again! |
|
| 1217 |
3037d 19h |
werner |
/ |
clean up repository - make 1.0 trunk again! |
|
| 1202 |
3088d 17h |
werner |
/branches/iland_regen/src/ |
searching/fixing issues with carbon cycle: NEP as provided by carbonflow output (NPP-Rh-Mgmt) is different from NEP as derived by the delta of the carbon stocks.
As usual, very hard to track down these issues, but:
* bark beetle module: foliage loss from BB-trees now correctly routed to soil
* order of modules in model: switched disturbances and carbon cylcle (in order to correctly track all carbon changes due to disturbances)
* fixed a problem with the calculation of NPP: after disturbances stand level NPP was set to 0 (since statistics were recalculated after disturbaces, but NPP values are not available then). Introduced: StandStatistics::clearOnlyTrees()
* flow from branches to the atmosphere (decay of branches) now tracked correctly (changes the NEP calulation). |
|
| 1160 |
3254d 16h |
werner |
/branches/iland_regen/src/core/ |
bug-fixes of the new establishment module (carbon)
first part of the YNP water limitation in establishment. |
|
| 1157 |
3256d 01h |
werner |
/branches/iland_regen/ |
merge of changes in the trunk (up to the version used for the 2016 DICE simulation batch). |
|
| 1104 |
3325d 23h |
werner |
/branches/iland_regen/ |
Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone |
|
| 1088 |
3394d 17h |
werner |
/branches/port_qt5_64bit/src/ |
salavage management bark beetle damages
some fixes w.r.t. the correct extent of grids.
added "year" as stand varaible (abe). |
|
| 925 |
3912d 17h |
werner |
/branches/port_qt5_64bit/src/core/ |
calculate 're' also when snags are empty (to avoid errors when snags are not properly initialized) |
|
| 779 |
4309d 18h |
werner |
/branches/port_qt5_64bit/ |
|
|
| 771 |
4439d 23h |
werner |
/trunk/src/core/ |
mini-change: calculate climate fators really only when snag is non-empty (see previous commit) |
|
| 770 |
4439d 23h |
werner |
/trunk/src/ |
fixed a bug with deadwood decay: (see analysis/extseeds/analyse_total_carbon20130113.docx). For a RU without vegetation (trees/saplings) the water cycle was not calculated -> therefore no values for evapotranspiration were available -> the climate factors for the deadwood decay were only driven by temperature (not by humidity) -> only a very slow decay until a RU got populated. Ouch.
now the water cycle is calculated for every resource unit with non-empty snags (either flux or state non-zero) |
|
| 713 |
4802d 23h |
werner |
/trunk/src/ |
implemented a way to split the biomass of a dead tree into several pathways (i.e. to soil, to snags, to atmosphere/removal). |
|
| 697 |
4849d 15h |
werner |
/trunk/ |
Doxygen documentation revisited.
After re-establishing doxygen documentation (last update: 2009) a lot of smaller/medium documentation fixes.
Documentation is something that could definitely be always improved ;) |
|
| 671 |
4892d 19h |
werner |
/trunk/src/ |
Necessary changes for GPL licence (i.e. headers in all source files) |
|
| 639 |
5053d 16h |
werner |
/ |
move current content to the "trunk" |
|
| 609 |
5119d 00h |
werner |
/src/ |
implementing CarbonFlow output and book keeping code. |
|
| 607 |
5119d 16h |
werner |
/src/core/ |
smaller fixes:
* error when exporting ESRI files
* a new JS function "slashSnags()" for managing standing dead trees
* handling of newly burnt tree when removing carbon due to a fire event |
|
| 605 |
5122d 22h |
werner |
/src/ |
added the "rid" (i.e. a unique id per resource unit) in various debug outputs.
added the "shell" of a new carbonflow output. |
|
| 595 |
5137d 01h |
werner |
/src/core/ |
changed behavior of coarse roots: if biomass exceeds value from allometric relation, the excell biomass is pushed to the soil (avoid piling up of coarse root carbon in the soil)
inlined some biomass functions in species.h. |
|
| 588 |
5150d 23h |
werner |
/src/core/ |
added carbon-bookkeeping in the regeneration layer. |
|
| 587 |
5151d 13h |
werner |
/src/ |
added carbon output.
lots of changes necessary to get this done (especially budgeting of biomass pools) |
|
| 574 |
5154d 00h |
werner |
/src/ |
* modified outputs to write only rows for valid resource units
* dropped setting "woodDecompRate" (snag.cpp)
* calculate the "stockableArea" of a resource unit based on the stand grid
* use the stockableArea for calculation of LAI |
|
| 564 |
5164d 16h |
werner |
/src/ |
Improvements of the Management API and functionality.
new functionality:
* killSaplings() -> use a "MapGrid" and remove small trees specifically
* properties defining biomass remove fractions during management
Now the tree list of the management object is cleaned up after a management, i.e. successive managements without reloading the tree list are possible. |
|
| 562 |
5167d 19h |
werner |
/src/ |
calculate ET0 (reference evapotranspiration) that is used for snag decay 're'. Another version of penman monteith is used for calculation.
See the excel - based "re_decomp.xlsx" for details |
|
| 557 |
5171d 16h |
werner |
/src/ |
added initialization of snags and some new resource unit variables.
Example: model.initialization node:
<snags>
<swdC>12000</swdC>
<swdCN>120</swdCN>
<swdCount>50</swdCount>
<otherC>4000</otherC>
<otherCN>30</otherCN>
<swdDecompRate>0.05</swdDecompRate>
<woodDecompRate>0.05</woodDecompRate>
<swdHalfLife>30</swdHalfLife>
</snags> |
|
| 553 |
5172d 20h |
werner |
/src/core/ |
another variant to calculate 're', following Adair et al 2008. Based on monthly sums of precipitation and PET. PET is calculated during the water cycle, monthly precipitation is summed in the climate object itself. |
|
| 552 |
5172d 22h |
werner |
/src/ |
fixed bug when calculating 're' with the day / dayOfMonth confusion. Changed name of the data field to avoid future problems. |
|
| 547 |
5174d 21h |
werner |
/src/core/ |
restructured the topLayerWaterContent setting; it is now RU-specific (and not a global parameter) |
|
| 546 |
5174d 23h |
werner |
/src/core/ |
modified calculation of 're' (decay rate for snags), and added new model setting ('topLayerWaterContent') for that purpose. New variable 'waterDeficit' per day in WaterCycle. |
|
| 541 |
5199d 20h |
werner |
/src/ |
included new setting "model.settings.decayReferencePsi" |
|
| 540 |
5199d 20h |
werner |
/src/ |
removed the storage of rel. water content in water cycle module; changed the way the climate modifier (re) for snag/soil decay is calculated.
Added the coarse wood of died trees to the 5-year decay pattern of branches (and renamed therefore to otherWood). |
|
| 534 |
5208d 20h |
werner |
/src/ |
large(r) update of the soil model. Now, the 'kyl' and 'kyr' parameters (i.e. decomposition rates for the litter/wood-soil pool) are now species parameters and calculated dynamically from the litter inputs. |
|
| 532 |
5212d 11h |
werner |
/src/ |
force calculation of 're' in Snag even if no snags are present (Soil needs that value later) |
|
| 528 |
5212d 13h |
werner |
/src/ |
more enabling of C/N cycling in iLand. little GUI-feature: click on a RU in resource-unit visualization now properly shows RU-related debug outputs. |
|
| 526 |
5212d 16h |
werner |
/src/ |
embedding the soil model into iLand. renamed the snag decay debug output. |
|
| 525 |
5212d 17h |
werner |
/src/ |
implemented ICBM/2N soil model (class Soil) and some testing code. So far, the results look promising. |
|
| 524 |
5212d 23h |
werner |
/src/ |
some polishing of the snag dynamics and extending the debug output for that. |
|