| Rev |
Age |
Author |
Path |
Log message |
Diff |
| 1222 |
3159d 16h |
werner |
/ |
public SVN |
|
| 1221 |
3159d 16h |
werner |
/branches/ |
public SVN |
|
| 1220 |
3159d 16h |
werner |
/branches/version1.0/ |
Version 1.0 |
|
| 1218 |
3159d 18h |
werner |
/ |
clean up repository - make 1.0 trunk again! |
|
| 1217 |
3159d 18h |
werner |
/ |
clean up repository - make 1.0 trunk again! |
|
| 1202 |
3210d 16h |
werner |
/branches/iland_regen/src/ |
searching/fixing issues with carbon cycle: NEP as provided by carbonflow output (NPP-Rh-Mgmt) is different from NEP as derived by the delta of the carbon stocks.
As usual, very hard to track down these issues, but:
* bark beetle module: foliage loss from BB-trees now correctly routed to soil
* order of modules in model: switched disturbances and carbon cylcle (in order to correctly track all carbon changes due to disturbances)
* fixed a problem with the calculation of NPP: after disturbances stand level NPP was set to 0 (since statistics were recalculated after disturbaces, but NPP values are not available then). Introduced: StandStatistics::clearOnlyTrees()
* flow from branches to the atmosphere (decay of branches) now tracked correctly (changes the NEP calulation). |
|
| 1160 |
3376d 15h |
werner |
/branches/iland_regen/src/core/ |
bug-fixes of the new establishment module (carbon)
first part of the YNP water limitation in establishment. |
|
| 1157 |
3378d 00h |
werner |
/branches/iland_regen/ |
merge of changes in the trunk (up to the version used for the 2016 DICE simulation batch). |
|
| 1104 |
3447d 22h |
werner |
/branches/iland_regen/ |
Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone |
|
| 1088 |
3516d 16h |
werner |
/branches/port_qt5_64bit/src/ |
salavage management bark beetle damages
some fixes w.r.t. the correct extent of grids.
added "year" as stand varaible (abe). |
|
| 925 |
4034d 16h |
werner |
/branches/port_qt5_64bit/src/core/ |
calculate 're' also when snags are empty (to avoid errors when snags are not properly initialized) |
|
| 779 |
4431d 17h |
werner |
/branches/port_qt5_64bit/ |
|
|
| 771 |
4561d 22h |
werner |
/trunk/src/core/ |
mini-change: calculate climate fators really only when snag is non-empty (see previous commit) |
|
| 770 |
4561d 22h |
werner |
/trunk/src/ |
fixed a bug with deadwood decay: (see analysis/extseeds/analyse_total_carbon20130113.docx). For a RU without vegetation (trees/saplings) the water cycle was not calculated -> therefore no values for evapotranspiration were available -> the climate factors for the deadwood decay were only driven by temperature (not by humidity) -> only a very slow decay until a RU got populated. Ouch.
now the water cycle is calculated for every resource unit with non-empty snags (either flux or state non-zero) |
|
| 713 |
4924d 22h |
werner |
/trunk/src/ |
implemented a way to split the biomass of a dead tree into several pathways (i.e. to soil, to snags, to atmosphere/removal). |
|
| 697 |
4971d 14h |
werner |
/trunk/ |
Doxygen documentation revisited.
After re-establishing doxygen documentation (last update: 2009) a lot of smaller/medium documentation fixes.
Documentation is something that could definitely be always improved ;) |
|
| 671 |
5014d 18h |
werner |
/trunk/src/ |
Necessary changes for GPL licence (i.e. headers in all source files) |
|
| 639 |
5175d 15h |
werner |
/ |
move current content to the "trunk" |
|
| 609 |
5240d 23h |
werner |
/src/ |
implementing CarbonFlow output and book keeping code. |
|
| 607 |
5241d 15h |
werner |
/src/core/ |
smaller fixes:
* error when exporting ESRI files
* a new JS function "slashSnags()" for managing standing dead trees
* handling of newly burnt tree when removing carbon due to a fire event |
|
| 605 |
5244d 21h |
werner |
/src/ |
added the "rid" (i.e. a unique id per resource unit) in various debug outputs.
added the "shell" of a new carbonflow output. |
|
| 595 |
5259d 00h |
werner |
/src/core/ |
changed behavior of coarse roots: if biomass exceeds value from allometric relation, the excell biomass is pushed to the soil (avoid piling up of coarse root carbon in the soil)
inlined some biomass functions in species.h. |
|
| 588 |
5272d 22h |
werner |
/src/core/ |
added carbon-bookkeeping in the regeneration layer. |
|
| 587 |
5273d 12h |
werner |
/src/ |
added carbon output.
lots of changes necessary to get this done (especially budgeting of biomass pools) |
|
| 574 |
5275d 23h |
werner |
/src/ |
* modified outputs to write only rows for valid resource units
* dropped setting "woodDecompRate" (snag.cpp)
* calculate the "stockableArea" of a resource unit based on the stand grid
* use the stockableArea for calculation of LAI |
|
| 564 |
5286d 15h |
werner |
/src/ |
Improvements of the Management API and functionality.
new functionality:
* killSaplings() -> use a "MapGrid" and remove small trees specifically
* properties defining biomass remove fractions during management
Now the tree list of the management object is cleaned up after a management, i.e. successive managements without reloading the tree list are possible. |
|
| 562 |
5289d 19h |
werner |
/src/ |
calculate ET0 (reference evapotranspiration) that is used for snag decay 're'. Another version of penman monteith is used for calculation.
See the excel - based "re_decomp.xlsx" for details |
|
| 557 |
5293d 15h |
werner |
/src/ |
added initialization of snags and some new resource unit variables.
Example: model.initialization node:
<snags>
<swdC>12000</swdC>
<swdCN>120</swdCN>
<swdCount>50</swdCount>
<otherC>4000</otherC>
<otherCN>30</otherCN>
<swdDecompRate>0.05</swdDecompRate>
<woodDecompRate>0.05</woodDecompRate>
<swdHalfLife>30</swdHalfLife>
</snags> |
|
| 553 |
5294d 19h |
werner |
/src/core/ |
another variant to calculate 're', following Adair et al 2008. Based on monthly sums of precipitation and PET. PET is calculated during the water cycle, monthly precipitation is summed in the climate object itself. |
|
| 552 |
5294d 21h |
werner |
/src/ |
fixed bug when calculating 're' with the day / dayOfMonth confusion. Changed name of the data field to avoid future problems. |
|
| 547 |
5296d 20h |
werner |
/src/core/ |
restructured the topLayerWaterContent setting; it is now RU-specific (and not a global parameter) |
|
| 546 |
5296d 22h |
werner |
/src/core/ |
modified calculation of 're' (decay rate for snags), and added new model setting ('topLayerWaterContent') for that purpose. New variable 'waterDeficit' per day in WaterCycle. |
|
| 541 |
5321d 19h |
werner |
/src/ |
included new setting "model.settings.decayReferencePsi" |
|
| 540 |
5321d 19h |
werner |
/src/ |
removed the storage of rel. water content in water cycle module; changed the way the climate modifier (re) for snag/soil decay is calculated.
Added the coarse wood of died trees to the 5-year decay pattern of branches (and renamed therefore to otherWood). |
|
| 534 |
5330d 19h |
werner |
/src/ |
large(r) update of the soil model. Now, the 'kyl' and 'kyr' parameters (i.e. decomposition rates for the litter/wood-soil pool) are now species parameters and calculated dynamically from the litter inputs. |
|
| 532 |
5334d 10h |
werner |
/src/ |
force calculation of 're' in Snag even if no snags are present (Soil needs that value later) |
|
| 528 |
5334d 12h |
werner |
/src/ |
more enabling of C/N cycling in iLand. little GUI-feature: click on a RU in resource-unit visualization now properly shows RU-related debug outputs. |
|
| 526 |
5334d 15h |
werner |
/src/ |
embedding the soil model into iLand. renamed the snag decay debug output. |
|
| 525 |
5334d 16h |
werner |
/src/ |
implemented ICBM/2N soil model (class Soil) and some testing code. So far, the results look promising. |
|
| 524 |
5334d 22h |
werner |
/src/ |
some polishing of the snag dynamics and extending the debug output for that. |
|