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Rev | Author | Line No. | Line |
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1211 | werner | 1 | /******************************************************************************************** |
2 | ** iLand - an individual based forest landscape and disturbance model |
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3 | ** http://iland.boku.ac.at |
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4 | ** Copyright (C) 2009- Werner Rammer, Rupert Seidl |
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5 | ** |
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6 | ** This program is free software: you can redistribute it and/or modify |
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7 | ** it under the terms of the GNU General Public License as published by |
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8 | ** the Free Software Foundation, either version 3 of the License, or |
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9 | ** (at your option) any later version. |
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10 | ** |
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11 | ** This program is distributed in the hope that it will be useful, |
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12 | ** but WITHOUT ANY WARRANTY; without even the implied warranty of |
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13 | ** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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14 | ** GNU General Public License for more details. |
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15 | ** |
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16 | ** You should have received a copy of the GNU General Public License |
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17 | ** along with this program. If not, see <http://www.gnu.org/licenses/>. |
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18 | ********************************************************************************************/ |
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1111 | werner | 19 | #include "global.h" |
20 | #include "saplings.h" |
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21 | |||
22 | #include "globalsettings.h" |
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23 | #include "model.h" |
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24 | #include "resourceunit.h" |
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25 | #include "resourceunitspecies.h" |
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26 | #include "establishment.h" |
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27 | #include "species.h" |
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28 | #include "seeddispersal.h" |
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1213 | werner | 29 | #include "mapgrid.h" |
1111 | werner | 30 | |
1113 | werner | 31 | double Saplings::mRecruitmentVariation = 0.1; // +/- 10% |
32 | double Saplings::mBrowsingPressure = 0.; |
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1111 | werner | 33 | |
1113 | werner | 34 | |
1111 | werner | 35 | Saplings::Saplings() |
36 | { |
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37 | |||
38 | } |
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39 | |||
40 | void Saplings::setup() |
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41 | { |
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1159 | werner | 42 | //mGrid.setup(GlobalSettings::instance()->model()->grid()->metricRect(), GlobalSettings::instance()->model()->grid()->cellsize()); |
43 | FloatGrid *lif_grid = GlobalSettings::instance()->model()->grid(); |
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1111 | werner | 44 | // mask out out-of-project areas |
45 | HeightGrid *hg = GlobalSettings::instance()->model()->heightGrid(); |
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1159 | werner | 46 | for (int i=0; i<lif_grid->count(); ++i) { |
47 | SaplingCell *s = cell(lif_grid->indexOf(i), false); // false: retrieve also invalid cells |
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48 | if (s) { |
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49 | if (!hg->valueAtIndex(lif_grid->index5(i)).isValid()) |
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50 | s->state = SaplingCell::CellInvalid; |
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51 | else |
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52 | s->state = SaplingCell::CellFree; |
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53 | } |
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54 | |||
1111 | werner | 55 | } |
56 | |||
57 | } |
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58 | |||
1178 | werner | 59 | void Saplings::calculateInitialStatistics(const ResourceUnit *ru) |
60 | { |
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61 | SaplingCell *sap_cells = ru->saplingCellArray(); |
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1196 | werner | 62 | if (!sap_cells) |
63 | return; |
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64 | |||
1178 | werner | 65 | SaplingCell *s = sap_cells; |
66 | |||
67 | for (int i=0; i<cPxPerHectare; ++i, ++s) { |
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68 | if (s->state != SaplingCell::CellInvalid) { |
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69 | int cohorts_on_px = s->n_occupied(); |
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70 | for (int j=0;j<NSAPCELLS;++j) { |
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71 | if (s->saplings[j].is_occupied()) { |
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72 | SaplingTree &tree=s->saplings[j]; |
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73 | ResourceUnitSpecies *rus = tree.resourceUnitSpecies(ru); |
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74 | rus->saplingStat().mLiving++; |
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75 | double n_repr = rus->species()->saplingGrowthParameters().representedStemNumberH(tree.height) / static_cast<double>(cohorts_on_px); |
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76 | if (tree.height>1.3f) |
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77 | rus->saplingStat().mLivingSaplings += n_repr; |
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78 | else |
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79 | rus->saplingStat().mLivingSmallSaplings += n_repr; |
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80 | |||
81 | rus->saplingStat().mAvgHeight+=tree.height; |
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82 | rus->saplingStat().mAvgAge+=tree.age; |
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83 | |||
84 | } |
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85 | } |
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86 | } |
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87 | } |
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88 | |||
89 | |||
90 | } |
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91 | |||
1111 | werner | 92 | void Saplings::establishment(const ResourceUnit *ru) |
93 | { |
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94 | FloatGrid *lif_grid = GlobalSettings::instance()->model()->grid(); |
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95 | |||
1118 | werner | 96 | QPoint imap = ru->cornerPointOffset(); // offset on LIF/saplings grid |
97 | QPoint iseedmap = QPoint(imap.x()/10, imap.y()/10); // seed-map has 20m resolution, LIF 2m -> factor 10 |
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1111 | werner | 98 | |
1158 | werner | 99 | for (QList<ResourceUnitSpecies*>::const_iterator i=ru->ruSpecies().constBegin(); i!=ru->ruSpecies().constEnd(); ++i) |
100 | (*i)->saplingStat().clearStatistics(); |
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101 | |||
102 | double lif_corr[cPxPerHectare]; |
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103 | for (int i=0;i<cPxPerHectare;++i) |
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104 | lif_corr[i]=-1.; |
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105 | |||
1164 | werner | 106 | int species_idx; |
107 | QVector<int>::const_iterator sbegin, send; |
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108 | ru->speciesSet()->randomSpeciesOrder(sbegin, send); |
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109 | for (QVector<int>::const_iterator s_idx=sbegin; s_idx!=send;++s_idx) { |
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1111 | werner | 110 | |
111 | // start from a random species (and cycle through the available species) |
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1164 | werner | 112 | species_idx = *s_idx; |
1111 | werner | 113 | |
114 | ResourceUnitSpecies *rus = ru->ruSpecies()[species_idx]; |
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1168 | werner | 115 | rus->establishment().clear(); |
116 | |||
1111 | werner | 117 | // check if there are seeds of the given species on the resource unit |
118 | float seeds = 0.f; |
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1118 | werner | 119 | Grid<float> &seedmap = const_cast<Grid<float>& >(rus->species()->seedDispersal()->seedMap()); |
1111 | werner | 120 | for (int iy=0;iy<5;++iy) { |
121 | float *p = seedmap.ptr(iseedmap.x(), iseedmap.y()); |
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122 | for (int ix=0;ix<5;++ix) |
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123 | seeds += *p++; |
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124 | } |
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125 | // if there are no seeds: no need to do more |
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126 | if (seeds==0.f) |
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127 | continue; |
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128 | |||
129 | // calculate the abiotic environment (TACA) |
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130 | rus->establishment().calculateAbioticEnvironment(); |
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131 | double abiotic_env = rus->establishment().abioticEnvironment(); |
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1168 | werner | 132 | if (abiotic_env==0.) { |
133 | rus->establishment().writeDebugOutputs(); |
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1111 | werner | 134 | continue; |
1168 | werner | 135 | } |
1111 | werner | 136 | |
137 | // loop over all 2m cells on this resource unit |
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1159 | werner | 138 | SaplingCell *sap_cells = ru->saplingCellArray(); |
1111 | werner | 139 | SaplingCell *s; |
140 | int isc = 0; // index on 2m cell |
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141 | for (int iy=0; iy<cPxPerRU; ++iy) { |
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1159 | werner | 142 | s = &sap_cells[iy*cPxPerRU]; // pointer to a row |
143 | isc = lif_grid->index(imap.x(), imap.y()+iy); |
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1111 | werner | 144 | |
1158 | werner | 145 | for (int ix=0;ix<cPxPerRU; ++ix, ++s, ++isc) { |
1111 | werner | 146 | if (s->state == SaplingCell::CellFree) { |
147 | // is a sapling of the current species already on the pixel? |
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148 | // * test for sapling height already in cell state |
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149 | // * test for grass-cover already in cell state |
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1158 | werner | 150 | SaplingTree *stree=0; |
151 | SaplingTree *slot=s->saplings; |
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152 | for (int i=0;i<NSAPCELLS;++i, ++slot) { |
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153 | if (!stree && !slot->is_occupied()) |
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154 | stree=slot; |
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155 | if (slot->species_index == species_idx) { |
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156 | stree=0; |
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157 | break; |
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1111 | werner | 158 | } |
159 | } |
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160 | |||
1158 | werner | 161 | if (stree) { |
1111 | werner | 162 | // grass cover? |
1159 | werner | 163 | float seed_map_value = seedmap[lif_grid->index10(isc)]; |
1111 | werner | 164 | if (seed_map_value==0.f) |
165 | continue; |
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166 | float lif_value = (*lif_grid)[isc]; |
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1158 | werner | 167 | |
168 | double &lif_corrected = lif_corr[iy*cPxPerRU+ix]; |
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1182 | werner | 169 | // calculate the LIFcorrected only once per pixel; the relative height is 0 (light level on the forest floor) |
1158 | werner | 170 | if (lif_corrected<0.) |
1178 | werner | 171 | lif_corrected = rus->species()->speciesSet()->LRIcorrection(lif_value, 0.); |
1158 | werner | 172 | |
1111 | werner | 173 | // check for the combination of seed availability and light on the forest floor |
1158 | werner | 174 | if (drandom() < seed_map_value*lif_corrected*abiotic_env ) { |
175 | // ok, lets add a sapling at the given position (age is incremented later) |
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176 | stree->setSapling(0.05f, 0, species_idx); |
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177 | s->checkState(); |
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178 | rus->saplingStat().mAdded++; |
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1111 | werner | 179 | |
1158 | werner | 180 | } |
1111 | werner | 181 | |
182 | } |
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183 | |||
184 | } |
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185 | } |
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186 | } |
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1168 | werner | 187 | // create debug output related to establishment |
188 | rus->establishment().writeDebugOutputs(); |
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1111 | werner | 189 | } |
190 | |||
191 | } |
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1113 | werner | 192 | |
193 | void Saplings::saplingGrowth(const ResourceUnit *ru) |
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194 | { |
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195 | HeightGrid *height_grid = GlobalSettings::instance()->model()->heightGrid(); |
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196 | FloatGrid *lif_grid = GlobalSettings::instance()->model()->grid(); |
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197 | |||
1159 | werner | 198 | QPoint imap = ru->cornerPointOffset(); |
1115 | werner | 199 | bool need_check=false; |
1159 | werner | 200 | SaplingCell *sap_cells = ru->saplingCellArray(); |
1177 | werner | 201 | |
1113 | werner | 202 | for (int iy=0; iy<cPxPerRU; ++iy) { |
1159 | werner | 203 | SaplingCell *s = &sap_cells[iy*cPxPerRU]; // ptr to row |
204 | int isc = lif_grid->index(imap.x(), imap.y()+iy); |
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1113 | werner | 205 | |
206 | for (int ix=0;ix<cPxPerRU; ++ix, ++s, ++isc) { |
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207 | if (s->state != SaplingCell::CellInvalid) { |
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1115 | werner | 208 | need_check=false; |
1177 | werner | 209 | int n_on_px = s->n_occupied(); |
1113 | werner | 210 | for (int i=0;i<NSAPCELLS;++i) { |
211 | if (s->saplings[i].is_occupied()) { |
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212 | // growth of this sapling tree |
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213 | const HeightGridValue &hgv = (*height_grid)[height_grid->index5(isc)]; |
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214 | float lif_value = (*lif_grid)[isc]; |
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215 | |||
1177 | werner | 216 | need_check |= growSapling(ru, *s, s->saplings[i], isc, hgv.height, lif_value, n_on_px); |
1113 | werner | 217 | } |
218 | } |
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1115 | werner | 219 | if (need_check) |
220 | s->checkState(); |
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1175 | werner | 221 | |
1113 | werner | 222 | } |
223 | } |
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224 | } |
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225 | |||
1158 | werner | 226 | |
227 | // store statistics on saplings/regeneration |
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228 | for (QList<ResourceUnitSpecies*>::const_iterator i=ru->ruSpecies().constBegin(); i!=ru->ruSpecies().constEnd(); ++i) { |
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1177 | werner | 229 | (*i)->saplingStat().calculate((*i)->species(), const_cast<ResourceUnit*>(ru)); |
1158 | werner | 230 | (*i)->statistics().add(&((*i)->saplingStat())); |
231 | } |
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1168 | werner | 232 | |
233 | // debug output related to saplings |
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234 | if (GlobalSettings::instance()->isDebugEnabled(GlobalSettings::dSaplingGrowth)) { |
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235 | |||
236 | // establishment details |
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237 | for (QList<ResourceUnitSpecies*>::const_iterator it=ru->ruSpecies().constBegin();it!=ru->ruSpecies().constEnd();++it) { |
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1177 | werner | 238 | if ((*it)->saplingStat().livingCohorts() == 0) |
1168 | werner | 239 | continue; |
240 | DebugList &out = GlobalSettings::instance()->debugList(ru->index(), GlobalSettings::dSaplingGrowth); |
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241 | out << (*it)->species()->id() << ru->index() <<ru->id(); |
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1177 | werner | 242 | out << (*it)->saplingStat().livingCohorts() << (*it)->saplingStat().averageHeight() << (*it)->saplingStat().averageAge() |
1168 | werner | 243 | << (*it)->saplingStat().averageDeltaHPot() << (*it)->saplingStat().averageDeltaHRealized(); |
244 | out << (*it)->saplingStat().newSaplings() << (*it)->saplingStat().diedSaplings() |
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245 | << (*it)->saplingStat().recruitedSaplings() <<(*it)->species()->saplingGrowthParameters().referenceRatio; |
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246 | } |
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247 | } |
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248 | |||
1113 | werner | 249 | } |
250 | |||
1162 | werner | 251 | SaplingCell *Saplings::cell(QPoint lif_coords, bool only_valid, ResourceUnit **rRUPtr) |
1159 | werner | 252 | { |
253 | FloatGrid *lif_grid = GlobalSettings::instance()->model()->grid(); |
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254 | |||
255 | // in this case, getting the actual cell is quite cumbersome: first, retrieve the resource unit, then the |
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256 | // cell based on the offset of the given coordiantes relative to the corner of the resource unit. |
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257 | ResourceUnit *ru = GlobalSettings::instance()->model()->ru(lif_grid->cellCenterPoint(lif_coords)); |
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1162 | werner | 258 | if (rRUPtr) |
259 | *rRUPtr = ru; |
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1160 | werner | 260 | |
1159 | werner | 261 | if (ru) { |
262 | QPoint local_coords = lif_coords - ru->cornerPointOffset(); |
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263 | int idx = local_coords.y() * cPxPerRU + local_coords.x(); |
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264 | DBGMODE( if (idx<0 || idx>=cPxPerHectare) |
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265 | qDebug("invalid coords in Saplings::cell"); |
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266 | ); |
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267 | SaplingCell *s=&ru->saplingCellArray()[idx]; |
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268 | if (s && (!only_valid || s->state!=SaplingCell::CellInvalid)) |
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269 | return s; |
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270 | } |
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271 | return 0; |
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272 | } |
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273 | |||
1162 | werner | 274 | void Saplings::clearSaplings(const QRectF &rectangle, const bool remove_biomass) |
275 | { |
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276 | GridRunner<float> runner(GlobalSettings::instance()->model()->grid(), rectangle); |
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277 | ResourceUnit *ru; |
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278 | while (runner.next()) { |
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279 | SaplingCell *s = cell(runner.currentIndex(), true, &ru); |
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280 | if (s) { |
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1165 | werner | 281 | clearSaplings(s, ru, remove_biomass); |
282 | } |
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1162 | werner | 283 | |
1165 | werner | 284 | } |
285 | } |
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286 | |||
287 | void Saplings::clearSaplings(SaplingCell *s, ResourceUnit *ru, const bool remove_biomass) |
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288 | { |
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289 | if (s) { |
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290 | for (int i=0;i<NSAPCELLS;++i) |
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291 | if (s->saplings[i].is_occupied()) { |
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292 | if (!remove_biomass) { |
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1174 | werner | 293 | ResourceUnitSpecies *rus = s->saplings[i].resourceUnitSpecies(ru); |
1165 | werner | 294 | if (!rus && !rus->species()) { |
295 | qDebug() << "Saplings::clearSaplings(): invalid resource unit!!!"; |
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296 | return; |
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1162 | werner | 297 | } |
1165 | werner | 298 | rus->saplingStat().addCarbonOfDeadSapling( s->saplings[i].height / rus->species()->saplingGrowthParameters().hdSapling * 100.f ); |
1162 | werner | 299 | } |
1165 | werner | 300 | s->saplings[i].clear(); |
301 | } |
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302 | s->checkState(); |
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1162 | werner | 303 | |
1165 | werner | 304 | } |
305 | |||
306 | } |
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307 | |||
308 | int Saplings::addSprout(const Tree *t) |
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309 | { |
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310 | if (t->species()->saplingGrowthParameters().sproutGrowth==0.) |
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311 | return 0; |
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312 | SaplingCell *sc = cell(t->positionIndex()); |
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313 | if (!sc) |
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314 | return 0; |
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315 | clearSaplings(sc, const_cast<ResourceUnit*>(t->ru()), false ); |
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316 | SaplingTree *st=sc->addSapling(0.05f, 0, t->species()->index()); |
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317 | if (st) |
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318 | st->set_sprout(true); |
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319 | |||
320 | // neighboring cells |
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321 | double crown_area = t->crownRadius()*t->crownRadius() * M_PI; //m2 |
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322 | // calculate how many cells on the ground are covered by the crown (this is a rather rough estimate) |
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323 | // n_cells: in addition to the original cell |
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324 | int n_cells = static_cast<int>(round( crown_area / static_cast<double>(cPxSize*cPxSize) - 1.)); |
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325 | if (n_cells>0) { |
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326 | ResourceUnit *ru; |
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327 | static const int offsets_x[8] = {1,1,0,-1,-1,-1,0,1}; |
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328 | static const int offsets_y[8] = {0,1,1,1,0,-1,-1,-1}; |
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329 | int s=irandom(0,8); |
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330 | while(n_cells) { |
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331 | sc = cell(t->positionIndex()+QPoint(offsets_x[s], offsets_y[s]),true,&ru); |
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332 | if (sc) { |
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333 | clearSaplings(sc, ru, false ); |
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334 | SaplingTree *st=sc->addSapling(0.05f, 0, t->species()->index()); |
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335 | if (st) |
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336 | st->set_sprout(true); |
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337 | } |
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338 | |||
339 | s = (s+1)%8; --n_cells; |
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1162 | werner | 340 | } |
341 | } |
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1165 | werner | 342 | return 1; |
1162 | werner | 343 | } |
344 | |||
1113 | werner | 345 | void Saplings::updateBrowsingPressure() |
346 | { |
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347 | if (GlobalSettings::instance()->settings().valueBool("model.settings.browsing.enabled")) |
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348 | Saplings::mBrowsingPressure = GlobalSettings::instance()->settings().valueDouble("model.settings.browsing.browsingPressure"); |
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349 | else |
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350 | Saplings::mBrowsingPressure = 0.; |
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351 | } |
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352 | |||
1177 | werner | 353 | bool Saplings::growSapling(const ResourceUnit *ru, SaplingCell &scell, SaplingTree &tree, int isc, float dom_height, float lif_value, int cohorts_on_px) |
1113 | werner | 354 | { |
1174 | werner | 355 | ResourceUnitSpecies *rus = tree.resourceUnitSpecies(ru); |
356 | |||
1113 | werner | 357 | const Species *species = rus->species(); |
358 | |||
359 | // (1) calculate height growth potential for the tree (uses linerization of expressions...) |
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360 | double h_pot = species->saplingGrowthParameters().heightGrowthPotential.calculate(tree.height); |
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361 | double delta_h_pot = h_pot - tree.height; |
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362 | |||
363 | // (2) reduce height growth potential with species growth response f_env_yr and with light state (i.e. LIF-value) of home-pixel. |
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364 | if (dom_height==0.f) |
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365 | throw IException(QString("growSapling: height grid at %1/%2 has value 0").arg(isc)); |
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366 | |||
367 | double rel_height = tree.height / dom_height; |
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368 | |||
369 | double lif_corrected = species->speciesSet()->LRIcorrection(lif_value, rel_height); // correction based on height |
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370 | |||
371 | double lr = species->lightResponse(lif_corrected); // species specific light response (LUI, light utilization index) |
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372 | |||
1182 | werner | 373 | rus->calculate(true); // calculate the 3pg module (this is done only once per RU); true: call comes from regeneration |
1118 | werner | 374 | double f_env_yr = rus->prod3PG().fEnvYear(); |
1113 | werner | 375 | |
1118 | werner | 376 | double delta_h_factor = f_env_yr * lr; // relative growth |
377 | |||
1113 | werner | 378 | if (h_pot<0. || delta_h_pot<0. || lif_corrected<0. || lif_corrected>1. || delta_h_factor<0. || delta_h_factor>1. ) |
379 | qDebug() << "invalid values in Sapling::growSapling"; |
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380 | |||
1165 | werner | 381 | // sprouts grow faster. Sprouts therefore are less prone to stress (threshold), and can grow higher than the growth potential. |
382 | if (tree.is_sprout()) |
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383 | delta_h_factor = delta_h_factor *species->saplingGrowthParameters().sproutGrowth; |
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384 | |||
1113 | werner | 385 | // check browsing |
386 | if (mBrowsingPressure>0. && tree.height<=2.f) { |
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387 | double p = rus->species()->saplingGrowthParameters().browsingProbability; |
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388 | // calculate modifed annual browsing probability via odds-ratios |
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389 | // odds = p/(1-p) -> odds_mod = odds * browsingPressure -> p_mod = odds_mod /( 1 + odds_mod) === p*pressure/(1-p+p*pressure) |
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390 | double p_browse = p*mBrowsingPressure / (1. - p + p*mBrowsingPressure); |
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391 | if (drandom() < p_browse) { |
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392 | delta_h_factor = 0.; |
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393 | } |
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394 | } |
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395 | |||
396 | // check mortality of saplings |
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397 | if (delta_h_factor < species->saplingGrowthParameters().stressThreshold) { |
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398 | tree.stress_years++; |
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399 | if (tree.stress_years > species->saplingGrowthParameters().maxStressYears) { |
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400 | // sapling dies... |
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1160 | werner | 401 | rus->saplingStat().addCarbonOfDeadSapling( tree.height / species->saplingGrowthParameters().hdSapling * 100.f ); |
1113 | werner | 402 | tree.clear(); |
1115 | werner | 403 | return true; // need cleanup |
1113 | werner | 404 | } |
405 | } else { |
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406 | tree.stress_years=0; // reset stress counter |
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407 | } |
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1165 | werner | 408 | DBG_IF(delta_h_pot*delta_h_factor < 0.f || (!tree.is_sprout() && delta_h_pot*delta_h_factor > 2.), "Sapling::growSapling", "inplausible height growth."); |
1113 | werner | 409 | |
410 | // grow |
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411 | tree.height += delta_h_pot * delta_h_factor; |
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412 | tree.age++; // increase age of sapling by 1 |
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413 | |||
414 | // recruitment? |
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415 | if (tree.height > 4.f) { |
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416 | rus->saplingStat().mRecruited++; |
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417 | |||
418 | float dbh = tree.height / species->saplingGrowthParameters().hdSapling * 100.f; |
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419 | // the number of trees to create (result is in trees per pixel) |
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420 | double n_trees = species->saplingGrowthParameters().representedStemNumber(dbh); |
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421 | int to_establish = static_cast<int>( n_trees ); |
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422 | |||
423 | // if n_trees is not an integer, choose randomly if we should add a tree. |
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424 | // e.g.: n_trees = 2.3 -> add 2 trees with 70% probability, and add 3 trees with p=30%. |
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425 | if (drandom() < (n_trees-to_establish) || to_establish==0) |
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426 | to_establish++; |
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427 | |||
428 | // add a new tree |
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429 | for (int i=0;i<to_establish;i++) { |
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430 | Tree &bigtree = const_cast<ResourceUnit*>(ru)->newTree(); |
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431 | |||
1159 | werner | 432 | bigtree.setPosition(GlobalSettings::instance()->model()->grid()->indexOf(isc)); |
1182 | werner | 433 | // add variation: add +/-N% to dbh and *independently* to height. |
1158 | werner | 434 | bigtree.setDbh(static_cast<float>(dbh * nrandom(1. - mRecruitmentVariation, 1. + mRecruitmentVariation))); |
435 | bigtree.setHeight(static_cast<float>(tree.height * nrandom(1. - mRecruitmentVariation, 1. + mRecruitmentVariation))); |
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1113 | werner | 436 | bigtree.setSpecies( const_cast<Species*>(species) ); |
437 | bigtree.setAge(tree.age,tree.height); |
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438 | bigtree.setRU(const_cast<ResourceUnit*>(ru)); |
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439 | bigtree.setup(); |
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440 | const Tree *t = &bigtree; |
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441 | const_cast<ResourceUnitSpecies*>(rus)->statistics().add(t, 0); // count the newly created trees already in the stats |
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442 | } |
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443 | // clear all regeneration from this pixel (including this tree) |
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444 | tree.clear(); // clear this tree (no carbon flow to the ground) |
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445 | for (int i=0;i<NSAPCELLS;++i) { |
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1159 | werner | 446 | if (scell.saplings[i].is_occupied()) { |
1113 | werner | 447 | // add carbon to the ground |
1174 | werner | 448 | ResourceUnitSpecies *srus = scell.saplings[i].resourceUnitSpecies(ru); |
449 | srus->saplingStat().addCarbonOfDeadSapling( scell.saplings[i].height / srus->species()->saplingGrowthParameters().hdSapling * 100.f ); |
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1159 | werner | 450 | scell.saplings[i].clear(); |
1113 | werner | 451 | } |
452 | } |
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1115 | werner | 453 | return true; // need cleanup |
1113 | werner | 454 | } |
455 | // book keeping (only for survivors) for the sapling of the resource unit / species |
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456 | SaplingStat &ss = rus->saplingStat(); |
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1177 | werner | 457 | double n_repr = species->saplingGrowthParameters().representedStemNumberH(tree.height) / static_cast<double>(cohorts_on_px); |
458 | if (tree.height>1.3f) |
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459 | ss.mLivingSaplings += n_repr; |
||
460 | else |
||
461 | ss.mLivingSmallSaplings += n_repr; |
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1113 | werner | 462 | ss.mLiving++; |
463 | ss.mAvgHeight+=tree.height; |
||
464 | ss.mAvgAge+=tree.age; |
||
465 | ss.mAvgDeltaHPot+=delta_h_pot; |
||
466 | ss.mAvgHRealized += delta_h_pot * delta_h_factor; |
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1115 | werner | 467 | return false; |
1113 | werner | 468 | } |
469 | |||
470 | void SaplingStat::clearStatistics() |
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471 | { |
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472 | mRecruited=mDied=mLiving=0; |
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1177 | werner | 473 | mLivingSaplings=0.; mLivingSmallSaplings=0.; |
1113 | werner | 474 | mSumDbhDied=0.; |
475 | mAvgHeight=0.; |
||
476 | mAvgAge=0.; |
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477 | mAvgDeltaHPot=mAvgHRealized=0.; |
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1158 | werner | 478 | mAdded=0; |
1113 | werner | 479 | |
480 | } |
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1158 | werner | 481 | |
1177 | werner | 482 | void SaplingStat::calculate(const Species *species, ResourceUnit *ru) |
1158 | werner | 483 | { |
484 | if (mLiving) { |
||
485 | mAvgHeight /= double(mLiving); |
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486 | mAvgAge /= double(mLiving); |
||
487 | mAvgDeltaHPot /= double(mLiving); |
||
488 | mAvgHRealized /= double(mLiving); |
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489 | } |
||
1178 | werner | 490 | if (GlobalSettings::instance()->currentYear()==0) |
491 | return; // no need for carbon flows in initial run |
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1158 | werner | 492 | |
493 | // calculate carbon balance |
||
494 | CNPair old_state = mCarbonLiving; |
||
495 | mCarbonLiving.clear(); |
||
496 | |||
497 | CNPair dead_wood, dead_fine; // pools for mortality |
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498 | // average dbh |
||
499 | if (mLiving>0) { |
||
500 | // calculate the avg dbh and number of stems |
||
501 | double avg_dbh = mAvgHeight / species->saplingGrowthParameters().hdSapling * 100.; |
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1177 | werner | 502 | // the number of "real" stems is given by the Reineke formula |
503 | double n = mLivingSaplings; // total number of saplings (>0.05m) |
||
1175 | werner | 504 | |
1158 | werner | 505 | // woody parts: stem, branchse and coarse roots |
506 | double woody_bm = species->biomassWoody(avg_dbh) + species->biomassBranch(avg_dbh) + species->biomassRoot(avg_dbh); |
||
507 | double foliage = species->biomassFoliage(avg_dbh); |
||
508 | double fineroot = foliage*species->finerootFoliageRatio(); |
||
509 | |||
510 | mCarbonLiving.addBiomass( woody_bm*n, species->cnWood() ); |
||
511 | mCarbonLiving.addBiomass( foliage*n, species->cnFoliage() ); |
||
512 | mCarbonLiving.addBiomass( fineroot*n, species->cnFineroot() ); |
||
513 | |||
1160 | werner | 514 | DBGMODE( |
515 | if (isnan(mCarbonLiving.C)) |
||
516 | qDebug("carbon NaN in SaplingStat::calculate (living trees)."); |
||
517 | ); |
||
518 | |||
1158 | werner | 519 | // turnover |
520 | if (ru->snag()) |
||
521 | ru->snag()->addTurnoverLitter(species, foliage*species->turnoverLeaf(), fineroot*species->turnoverRoot()); |
||
522 | |||
523 | // calculate the "mortality from competition", i.e. carbon that stems from reduction of stem numbers |
||
524 | // from Reinekes formula. |
||
525 | // |
||
526 | if (avg_dbh>1.) { |
||
527 | double avg_dbh_before = (mAvgHeight - mAvgHRealized) / species->saplingGrowthParameters().hdSapling * 100.; |
||
1177 | werner | 528 | double n_before = mLiving * species->saplingGrowthParameters().representedStemNumber( qMax(1.,avg_dbh_before) ); |
1158 | werner | 529 | if (n<n_before) { |
530 | dead_wood.addBiomass( woody_bm * (n_before-n), species->cnWood() ); |
||
531 | dead_fine.addBiomass( foliage * (n_before-n), species->cnFoliage() ); |
||
532 | dead_fine.addBiomass( fineroot * (n_before-n), species->cnFineroot() ); |
||
1160 | werner | 533 | DBGMODE( |
534 | if (isnan(dead_fine.C)) |
||
535 | qDebug("carbon NaN in SaplingStat::calculate (self thinning)."); |
||
536 | ); |
||
537 | |||
1158 | werner | 538 | } |
539 | } |
||
540 | |||
541 | } |
||
542 | if (mDied) { |
||
543 | double avg_dbh_dead = mSumDbhDied / double(mDied); |
||
1177 | werner | 544 | double n = mDied * species->saplingGrowthParameters().representedStemNumber( avg_dbh_dead ); |
1158 | werner | 545 | // woody parts: stem, branchse and coarse roots |
546 | |||
547 | dead_wood.addBiomass( ( species->biomassWoody(avg_dbh_dead) + species->biomassBranch(avg_dbh_dead) + species->biomassRoot(avg_dbh_dead)) * n, species->cnWood() ); |
||
548 | double foliage = species->biomassFoliage(avg_dbh_dead)*n; |
||
549 | |||
550 | dead_fine.addBiomass( foliage, species->cnFoliage() ); |
||
551 | dead_fine.addBiomass( foliage*species->finerootFoliageRatio(), species->cnFineroot() ); |
||
1160 | werner | 552 | DBGMODE( |
553 | if (isnan(dead_fine.C)) |
||
554 | qDebug("carbon NaN in SaplingStat::calculate (died trees)."); |
||
555 | ); |
||
556 | |||
1158 | werner | 557 | } |
558 | if (!dead_wood.isEmpty() || !dead_fine.isEmpty()) |
||
559 | if (ru->snag()) |
||
560 | ru->snag()->addToSoil(species, dead_wood, dead_fine); |
||
561 | |||
562 | // calculate net growth: |
||
563 | // delta of stocks |
||
564 | mCarbonGain = mCarbonLiving + dead_fine + dead_wood - old_state; |
||
565 | if (mCarbonGain.C < 0) |
||
566 | mCarbonGain.clear(); |
||
567 | |||
568 | |||
569 | GlobalSettings::instance()->systemStatistics()->saplingCount+=mLiving; |
||
570 | GlobalSettings::instance()->systemStatistics()->newSaplings+=mAdded; |
||
571 | |||
572 | } |
||
1162 | werner | 573 | |
574 | double SaplingStat::livingStemNumber(const Species *species, double &rAvgDbh, double &rAvgHeight, double &rAvgAge) const |
||
575 | { |
||
576 | rAvgHeight = averageHeight(); |
||
577 | rAvgDbh = rAvgHeight / species->saplingGrowthParameters().hdSapling * 100.f; |
||
578 | rAvgAge = averageAge(); |
||
579 | double n= species->saplingGrowthParameters().representedStemNumber(rAvgDbh); |
||
580 | return n; |
||
581 | // *** old code (sapling.cpp) *** |
||
582 | // double total = 0.; |
||
583 | // double dbh_sum = 0.; |
||
584 | // double h_sum = 0.; |
||
585 | // double age_sum = 0.; |
||
586 | // const SaplingGrowthParameters &p = mRUS->species()->saplingGrowthParameters(); |
||
587 | // for (QVector<SaplingTreeOld>::const_iterator it = mSaplingTrees.constBegin(); it!=mSaplingTrees.constEnd(); ++it) { |
||
588 | // float dbh = it->height / p.hdSapling * 100.f; |
||
589 | // if (dbh<1.) // minimum size: 1cm |
||
590 | // continue; |
||
591 | // double n = p.representedStemNumber(dbh); // one cohort on the pixel represents that number of trees |
||
592 | // dbh_sum += n*dbh; |
||
593 | // h_sum += n*it->height; |
||
594 | // age_sum += n*it->age.age; |
||
595 | // total += n; |
||
596 | // } |
||
597 | // if (total>0.) { |
||
598 | // dbh_sum /= total; |
||
599 | // h_sum /= total; |
||
600 | // age_sum /= total; |
||
601 | // } |
||
602 | // rAvgDbh = dbh_sum; |
||
603 | // rAvgHeight = h_sum; |
||
604 | // rAvgAge = age_sum; |
||
605 | // return total; |
||
606 | } |
||
1174 | werner | 607 | |
608 | ResourceUnitSpecies *SaplingTree::resourceUnitSpecies(const ResourceUnit *ru) |
||
609 | { |
||
610 | if (!ru || !is_occupied()) |
||
611 | return 0; |
||
612 | ResourceUnitSpecies *rus = ru->resourceUnitSpecies(species_index); |
||
613 | return rus; |
||
614 | } |
||
1213 | werner | 615 | |
616 | SaplingCellRunner::SaplingCellRunner(const int stand_id, const MapGrid *stand_grid) |
||
617 | { |
||
618 | mRunner = 0; |
||
619 | mRU = 0; |
||
620 | mStandId = stand_id; |
||
621 | mStandGrid = stand_grid ? stand_grid : GlobalSettings::instance()->model()->standGrid(); |
||
622 | QRectF box = mStandGrid->boundingBox(stand_id); |
||
623 | mRunner = new GridRunner<float>(GlobalSettings::instance()->model()->grid(), box); |
||
624 | |||
625 | } |
||
626 | |||
1214 | werner | 627 | SaplingCellRunner::~SaplingCellRunner() |
628 | { |
||
629 | if (mRunner) |
||
630 | delete mRunner; |
||
631 | } |
||
632 | |||
1213 | werner | 633 | SaplingCell *SaplingCellRunner::next() |
634 | { |
||
635 | if (!mRunner) |
||
636 | return 0; |
||
637 | while (float *n = mRunner->next()) { |
||
638 | if (!n) |
||
639 | return 0; // end of the bounding box |
||
640 | if (mStandGrid->standIDFromLIFCoord(mRunner->currentIndex()) != mStandId) |
||
641 | continue; // pixel does not belong to the target stand |
||
642 | mRU = GlobalSettings::instance()->model()->ru(mRunner->currentCoord()); |
||
643 | SaplingCell *sc=0; |
||
644 | if (mRU) |
||
645 | sc=mRU->saplingCell(mRunner->currentIndex()); |
||
646 | if (sc) |
||
647 | return sc; |
||
648 | qDebug() << "SaplingCellRunner::next(): unexected missing SaplingCell!"; |
||
649 | return 0; |
||
650 | } |
||
651 | return 0; |
||
652 | } |
||
653 | |||
654 | QPointF SaplingCellRunner::currentCoord() const |
||
655 | { |
||
656 | return mRunner->currentCoord(); |
||
657 | } |